WormSynteny

Visualizing genomic evolution in nematodes

Wormsynteny2

Explore the new alignment and gene annotations across 36 nematode genomes.
Search with C. elegans genes or genomic coordinates.

Open Wormsynteny2

Original WormSynteny

The original eleven-genome dataset remains available.

Open original WormSynteny

Instructions of the App can be found at: https://github.com/Zhenglabhku/WormSynteny/

You can also download a local version at:https://github.com/Zhenglabhku/WormSynteny/

Citation of the App:

Bouvarel, L.#, Liu, D.#, and Zheng, C.* Visualizing genomic evolution in Caenorhabditis through WormSynteny. BMC Genomics. 2024 Oct 28;25(1):1009.

Orthogroup information for the original eleven-genome dataset can be found in:

Ma, F., Lau, C.Y., and Zheng, C.* Young duplicate genes show developmental stage- and cell type-specific expression and function in Caenorhabditis elegans. Cell Genomics. 2024 Jan 10;4(1):100467.

Genomes included in the original eleven-genome version:

Caenorhabditis becei (PRJEB28243)
Caenorhabditis bovis (PRJEB34497)
Caenorhabditis briggsae (PRJNA10731)
Caenorhabditis elegans (PRJNA13758)
Caenorhabditis inopinata (PRJDB5687)
Caenorhabditis latens (PRJNA248912)
Caenorhabditis nigoni (PRJNA384657)
Caenorhabditis panamensis (PRJEB28259)
Caenorhabditis remanei (PRJNA57750)
Caenorhabditis tribulationis (PRJEB12608)
Caenorhabditis tropicalis (PRJNA53597)

Contact:

Lilly Bouvarel (lillybouvarel@hotmail.fr)
Chaogu Zheng (cgzheng@hku.hk)