WormSynteny

Visualizing genomic evolution in nematodes

The results of the alignment of eleven Caenorhabditis genomes by Progressive Cactus can be explored through the web App:

WormSynteny

or the link: https://wormsynteny.org/Wormsynteny/

Instructions of the App can be found at: https://github.com/Zhenglabhku/WormSynteny/

You can also download a local version at:https://github.com/Zhenglabhku/WormSynteny/

Citation of the App:

Bouvarel, L.#, Liu, D.#, and Zheng, C.* Visualizing genomic evolution in Caenorhabditis through WormSynteny. BMC Genomics. 2024 Oct 28;25(1):1009.

Orthogroup information can be found in:

Ma, F., Lau, C.Y., and Zheng, C.* Young duplicate genes show developmental stage- and cell type-specific expression and function in Caenorhabditis elegans. Cell Genomics. 2024 Jan 10;4(1):100467.

Genomes included in the current version:

Caenorhabditis becei (PRJEB28243)
Caenorhabditis bovis (PRJEB34497)
Caenorhabditis briggsae (PRJNA10731)
Caenorhabditis elegans (PRJNA13758)
Caenorhabditis inopinata (PRJDB5687)
Caenorhabditis latens (PRJNA248912)
Caenorhabditis nigoni (PRJNA384657)
Caenorhabditis panamensis (PRJEB28259)
Caenorhabditis remanei (PRJNA57750)
Caenorhabditis tribulationis (PRJEB12608)
Caenorhabditis tropicalis (PRJNA53597)

Contact:

Lilly Bouvarel (lillybouvarel@hotmail.fr)
Chaogu Zheng (cgzheng@hku.hk)